Skip to content

Variant

Notebook link where you can find all the graphs.

Data created on 17.10.2022 at 19:32:45

Data updated on 17.10.2022 at 19:32:45

Support by Ontologies

The BRENDA Tissue Ontology - BTO and Experimental Factor Ontology - EFO are good sources for variants.

Variants are found only in metabolomics-related repositories, i.e., MTBLS and MW.

Field TypeField NameValues ReadabilityUnitMissing
MTBLSdedicatedVariantfree textnoneThe field is not provided; or the value is provided as N/A or other similar expressions; or the study "assays" value is "null"; or the organism is not found in NCBI taxonomy.
MWdedicatedGENOTYPE_STRAINfree textnoneThe field is not provided; or the value is provided as N/A or other similar expressions; or decoding the JSON file containing the study details has failed due to syntax error there; or the organism was not found in NCBI taxonomy.
Input ExamplesOutput
MTBLS["Mus musculus str. SAMP1/YitFc", "BY4741", "Thoroughbred", "EFO:Thalassiosira pseudonana CCMP1335"]["c57Bl-6", "c3h-hen", etc.]
MW["C57BL/6", "Swiss Webster Mice", "C3H/HeN"]["c57Bl-6", "c3h-hen", etc.]

Results

Variants details are available in metabolomics repositories. The most used variant was "C57BL/6J".

A rough estimate of the percentages of all studies in MTBLS and MW repositories based on the variant